Publications


Authors: Type:

2020

  • [DOI] R. S. Barros, W. E. van der Steen, A. M. M. Boers, I. Zijlstra, R. van den Berg, W. El Youssoufi, A. Urwald, D. Verbaan, P. Vandertop, C. Majoie, S. D. Olabarriaga, and H. A. Marquering, “Automated segmentation of subarachnoid hemorrhages with convolutional neural networks,” Informatics in medicine unlocked, vol. 19, 2020.
    [Bibtex] 
    @article{BARROS2020,
title = "Automated segmentation of subarachnoid hemorrhages with convolutional neural networks",
journal = "Informatics in Medicine Unlocked",
volume = "19",
year = "2020",
doi = "https://doi.org/10.1016/j.imu.2020.100321",
url = "http://www.sciencedirect.com/science/article/pii/S2352914820300769",
author = "Renan Sales Barros and Wessel E. {van der Steen} and Anna M.M. Boers and IJsbrand Zijlstra and Rene {van den Berg} and Wassim {El Youssoufi} and Alexandre Urwald and Dagmar Verbaan and Peter Vandertop and Charles Majoie and Silvia Delgado Olabarriaga and Henk A. Marquering",
doi="https://doi.org/10.1016/j.imu.2020.100321",
}
  • [DOI] M. T. de Oliveira, L. H. A. Reis, D. S. V. Medeiros, R. C. Carrano, S. D. Olabarriaga, and D. M. F. Mattos, “Blockchain reputation-based consensus: a scalable and resilient mechanism for distributed mistrusting applications,” Computer networks, p. 107367, 2020.
    [Bibtex] 
    @article{de2020blockchain,
title={Blockchain Reputation-Based Consensus: A Scalable and Resilient Mechanism for Distributed Mistrusting Applications},
author={de Oliveira, M. T. and Reis, L.H.A. and Medeiros, D.S.V. and Carrano, R.C. and Olabarriaga, S.D. and Mattos, D.M.F.},
journal={Computer Networks},
pages={107367},
year={2020},
publisher={Elsevier},
doi={https://doi.org/10.1016/j.comnet.2020.107367},
}
  • L. A. Ramos, M. Kappelhof, H. Van Os, V. Chalos, K. R. Kranendonk, N. D. Kruyt, Y. B. W. E. M. Roos, A. van der Lugt, W. H. Van Zwam, I. C. van der Schaaf, A. H. Zwinderman, G. J. Strijkers, M. A. A. Van Walderveen, M. J. H. Wermer, S. D. Olabarriaga, C. B. L. M. Majoie, and H. A. Marquering, “Predicting poor outcome prior to endovascular treatment in patients with acute ischemic stroke,” Frontiers in neurology, section stroke, p. accepted, 2020.
    [Bibtex] 
    @article{lucas2020poor,
title={Predicting poor outcome prior to endovascular treatment in patients with acute ischemic stroke},
author={Ramos, L.A. and Kappelhof, M and Van Os, H and Chalos, V and Kranendonk, K.R. and Kruyt, N.D. and Roos, Y.B.W.E.M and van der Lugt, A and Van Zwam, W.H. and van der Schaaf, I.C. and Zwinderman, A.H. and Strijkers, G.J. and Van Walderveen, M.A.A. and Wermer, M.J.H. and Olabarriaga, S.D. and Majoie, C.B.L.M and Marquering, H.A.},
journal={Frontiers in Neurology, section Stroke},
pages={accepted},
year={2020},
publisher={Frontiers},
doi={},
}
  • [DOI] M. T. de Oliveira, A. Bakas, E. Frimpong, A. E. D. Groot, H. A. Marquering, A. Michalas, and S. D. Olabarriaga, “A break-glass protocol based on ciphertext-policy attribute-based encryption to access medical records in the cloud,” Annals of Telecommunications, vol. 75, pp. 103-119, 2020.
    [Bibtex] 
    @article{tuler2020,
Author = {T. de Oliveira, Marcela and Bakas, Alexandros and Frimpong, Eugene and Groot, Adrien E. D. and Marquering, Henk A. and Michalas, Antonis and Olabarriaga, Silvia D.},
Doi = {10.1007/s12243-020-00759-2},
Id = {T. de Oliveira2020},
Isbn = {1958-9395},
Journal = {{Annals of Telecommunications}},
Title = {A break-glass protocol based on ciphertext-policy attribute-based encryption to access medical records in the cloud},
Url = {https://doi.org/10.1007/s12243-020-00759-2},
Year = {2020},
Volume = {75},
Pages = {103-119},
}
  • [DOI] T. Tervoort, M. T. De Oliveira, W. Pieters, P. Van Gelder, S. D. Olabarriaga, and H. Marquering, “Solutions for mitigating cybersecurity risks caused by legacy software in medical devices: a scoping review,” Ieee access, pp. 1-1, 2020.
    [Bibtex] 
    @ARTICLE{tom2020,
author={Tervoort, T. and De Oliveira, M.T. and Pieters, W. and Van Gelder, P. and Olabarriaga, S.D. and Marquering, H.},
journal={IEEE Access},
title={Solutions for mitigating cybersecurity risks caused by legacy software in medical devices: a scoping review},
year={2020},
volume={},
number={},
pages={1-1},
doi={https://doi.org/10.1109/ACCESS.2020.2984376},
}

2019

  • [DOI] A. J. van Altena, R. Spijker, and S. D. Olabarriaga, “Usage of automation tools in systematic reviews,” Research Synthesis Methods, pp. 1-11, 2019.
    [Bibtex] 
    @article{altena2019,
Author = {van Altena, Allard J. and Spijker, R. and Olabarriaga, S.D.},
Doi = {10.1002/jrsm.1335},
Journal = {{Research Synthesis Methods}},
Pages = {1-11},
Title = {{Usage of automation tools in systematic reviews}},
Url = {https://onlinelibrary.wiley.com/doi/full/10.1002/jrsm.1335},
Year = {2019}}
  • [DOI] A. J. van Altena, P. D. Moerland, A. H. Zwinderman, and S. D. Olabarriaga, “Usage of the Term Big Data in Biomedical Publications: A Text Mining Approach,” Big Data and Cognitive Computing, vol. 3, iss. 1, 2019.
    [Bibtex] 
    @article{ref1,
Author = {van Altena, Allard J. and Moerland, Perry D. and Zwinderman, Aeilko H. and Olabarriaga, S{\'\i}lvia Delgado},
Doi = {10.3390/bdcc3010013},
Issn = {2504-2289},
Journal = {{Big Data and Cognitive Computing}},
Number = {1},
Title = {{Usage of the Term Big Data in Biomedical Publications: A Text Mining Approach}},
Url = {http://www.mdpi.com/2504-2289/3/1/13},
Volume = {3},
Year = {2019},}
  • [DOI] M. Barker, S. D. Olabarriaga, N. Wilkins-Diehr, S. Gesing, D. S. Katz, S. Shahand, S. Henwood, T. Glatard, K. Jeffery, B. Corrie, A. Treloar, H. Glaves, L. Wyborn, N. C. P. Hong, and A. Costa, “The global impact of science gateways, virtual research environments and virtual laboratories,” Future Generation Computer Systems, vol. 95, pp. 240-248, 2019.
    [Bibtex] 
    @article{BARKER2019240,
Author = {Michelle Barker and Silvia Delgado Olabarriaga and Nancy Wilkins-Diehr and Sandra Gesing and Daniel S. Katz and Shayan Shahand and Scott Henwood and Tristan Glatard and Keith Jeffery and Brian Corrie and Andrew Treloar and Helen Glaves and Lesley Wyborn and Neil P. Chue Hong and Alessandro Costa},
Doi = {https://doi.org/10.1016/j.future.2018.12.026},
Issn = {0167-739X},
Journal = {{Future Generation Computer Systems}},
Keywords = {Science gateways, Virtual research environments, Virtual laboratories, Open science, e-infrastructure, Cyberinfrastructure},
Pages = {240 - 248},
Title = {The global impact of science gateways, virtual research environments and virtual laboratories},
Url = {http://www.sciencedirect.com/science/article/pii/S0167739X18314018},
Volume = {95},
Year = {2019}}
  • [DOI] A. Hilbert, L. A. Ramos, H. J. A. van Os, S. D. Olabarriaga, M. L. Tolhuisen, M. J. H. Wermer, R. S. Barros, I. van der Schaaf, D. Dippel, Y. B. W. E. M. Roos, W. H. van Zwam, A. J. Yoo, B. J. Emmer, L. G. J. à. Nijeholt, A. H. Zwinderman, G. J. Strijkers, C. B. L. M. Majoie, and H. A. Marquering, “Data-efficient deep learning of radiological image data for outcome prediction after endovascular treatment of patients with acute ischemic stroke,” Computers in Biology and Medicine, vol. 115, p. 103516, 2019.
    [Bibtex] 
    @article{HILBERT2019103516,
title = "Data-efficient deep learning of radiological image data for outcome prediction after endovascular treatment of patients with acute ischemic stroke",
journal = {{Computers in Biology and Medicine}},
volume = "115",
pages = "103516",
year = "2019",
issn = "0010-4825",
doi = "https://doi.org/10.1016/j.compbiomed.2019.103516",
url = "http://www.sciencedirect.com/science/article/pii/S0010482519303786",
author = "A. Hilbert and L.A. Ramos and H.J.A. van Os and S.D. Olabarriaga and M.L. Tolhuisen and M.J.H. Wermer and R.S. Barros and I. van der Schaaf and D. Dippel and Y.B.W.E.M. Roos and W.H. van Zwam and A.J. Yoo and B.J. Emmer and G.J. Lycklama à Nijeholt and A.H. Zwinderman and G.J. Strijkers and C.B.L.M. Majoie and H.A. Marquering",
}
  • G. Pierantoni, T. Kiss, G. Terstyanszky, H. Dang, S. Olabarriaga, M. Tuler de Olivera, K. Y. Yigzaw, J. G. Belika, D. Krefting, and T. Penzel, “A secure cloud-based platform to host healthcare applications,” in 11th International Workshop on Science Gateways (IWSG 2019), 2019.
    [Bibtex] 
    @INPROCEEDINGS{asclepios2019,
author={Pierantoni, G. and Kiss, T. and Terstyanszky, G. and Dang, H. and Olabarriaga, S. and Tuler de Olivera, M. and Yigzaw, K. Y. and Belika, J. G. and Krefting, D. and Penzel, T.},
title={A Secure Cloud-based Platform to Host Healthcare Applications},
booktitle={{11th International Workshop on Science Gateways (IWSG 2019)}},
year={2019},
month={Jun},
}
  • [DOI] R. Sales Barros, M. L. Tolhuisen, A. M. Boers, I. Jansen, E. Ponomareva, D. W. J. Dippel, A. van der Lugt, R. J. van Oostenbrugge, W. H. van Zwam, O. A. Berkhemer, M. Goyal, A. M. Demchuk, B. K. Menon, P. Mitchell, M. D. Hill, T. G. Jovin, A. Davalos, B. C. V. Campbell, J. L. Saver, Y. B. W. E. M. Roos, K. W. Muir, P. White, S. Bracard, F. Guillemin, S. D. Olabarriaga, C. B. L. M. Majoie, and H. A. Marquering, “Automatic segmentation of cerebral infarcts in follow-up computed tomography images with convolutional neural networks,” Journal of NeuroInterventional Surgery,, 2019.
    [Bibtex] 
    @article{renan2020,
author = {Sales Barros, Renan and Tolhuisen, Manon L and Boers, Anna MM and Jansen, Ivo and Ponomareva, Elena and Dippel, Diederik W J and van der Lugt, Aad and van Oostenbrugge, Robert J and van Zwam, Wim H and Berkhemer, Olvert A and Goyal, Mayank and Demchuk, Andrew M and Menon, Bijoy K and Mitchell, Peter and Hill, Michael D and Jovin, Tudor G and Davalos, Antoni and Campbell, Bruce C V and Saver, Jeffrey L and Roos, Yvo B W E M and Muir, Keith W. and White, Phil and Bracard, Serge and Guillemin, Francis and Olabarriaga, Silvia D and Majoie, Charles B L M and Marquering, Henk A},
title = {Automatic segmentation of cerebral infarcts in follow-up computed tomography images with convolutional neural networks},
year = {2019},
doi = {10.1136/neurintsurg-2019-015471},
publisher = {British Medical Journal Publishing Group},
journal = {{Journal of NeuroInterventional Surgery},}
}
  • [DOI] M. T. de Oliveira, A. Michalas, A. E. D. Groot, H. A. Marquering, and S. D. Olabarriaga, “Red Alert: Break-Glass Protocol to Access Encrypted Medical Records in the Cloud,” in 2019 IEEE International Conference on E-health Networking, Application Services (HealthCom), 2019, pp. 1-7.
    [Bibtex] 
    @INPROCEEDINGS{tuler2019-healthcom,
author={M. T. {de Oliveira} and A. {Michalas} and A. E. D. {Groot} and H. A. {Marquering} and S. D. {Olabarriaga}},
booktitle={{2019 IEEE International Conference on E-health Networking, Application Services (HealthCom)}},
title={{Red Alert: Break-Glass Protocol to Access Encrypted Medical Records in the Cloud}},
year={2019},
pages={1-7},
doi={10.1109/HealthCom46333.2019.9009598},
month={Oct},}
  • [DOI] M. T. de Oliveira, L. H. A. Reis, R. C. Carrano, F. L. Seixas, D. C. M. Saade, C. V. Albuquerque, N. C. Fernandes, S. D. Olabarriaga, D. S. V. Medeiros, and D. M. F. Mattos, “Towards a Blockchain-Based Secure Electronic Medical Record for Healthcare Applications,” in ICC 2019 – 2019 IEEE International Conference on Communications (ICC), 2019, pp. 1-6.
    [Bibtex] 
    @INPROCEEDINGS{8761307,
author={M. T. {de Oliveira} and L. H. A. {Reis} and R. C. {Carrano} and F. L. {Seixas} and D. C. M. {Saade} and C. V. {Albuquerque} and N. C. {Fernandes} and S. D. {Olabarriaga} and D. S. V. {Medeiros} and D. M. F. {Mattos}},
booktitle={{ICC 2019 - 2019 IEEE International Conference on Communications (ICC)}},
title={{Towards a Blockchain-Based Secure Electronic Medical Record for Healthcare Applications}},
year={2019},
pages={1-6},
doi={10.1109/ICC.2019.8761307},
ISSN={1550-3607},
month={May},}

2018

  • [DOI] H. J. A. van Os, L. A. Ramos, A. Hilbert, M. van Leeuwen, M. A. A. van Walderveen, N. D. Kruyt, D. W. J. Dippel, E. W. Steyerberg, I. C. van der Schaaf, H. F. Lingsma, W. J. Schonewille, C. B. L. M. Majoie, S. D. Olabarriaga, K. H. Zwinderman, E. Venema, H. A. Marquering, M. J. H. Wermer, and M. C. R. I. the, “Predicting Outcome of Endovascular Treatment for Acute Ischemic Stroke: Potential Value of Machine Learning Algorithms,” Frontiers in Neurology, vol. 9, p. 784, 2018.
    [Bibtex] 
    @article{10.3389/fneur.2018.00784,
Author = {van Os, Hendrikus J. A. and Ramos, Lucas A. and Hilbert, Adam and van Leeuwen, Matthijs and van Walderveen, Marianne A. A. and Kruyt, Nyika D. and Dippel, Diederik W. J. and Steyerberg, Ewout W. and van der Schaaf, Irene C. and Lingsma, Hester F. and Schonewille, Wouter J. and Majoie, Charles B. L. M. and Olabarriaga, Silvia D. and Zwinderman, Koos H. and Venema, Esmee and Marquering, Henk A. and Wermer, Marieke J. H. and , the MR CLEAN Registry Investigators},
Doi = {10.3389/fneur.2018.00784},
Issn = {1664-2295},
Journal = {{Frontiers in Neurology}},
Pages = {784},
Title = {{Predicting Outcome of Endovascular Treatment for Acute Ischemic Stroke: Potential Value of Machine Learning Algorithms}},
Url = {https://www.frontiersin.org/article/10.3389/fneur.2018.00784},
Volume = {9},
Year = {2018},}
  • [DOI] L. A. Ramos, W. E. van der Steen, R. Sales Barros, C. B. L. M. Majoie, R. van den Berg, D. Verbaan, P. W. Vandertop, J. A. J. I. Zijlstra, A. H. Zwinderman, G. J. Strijkers, S. D. Olabarriaga, and H. A. Marquering, “Machine learning improves prediction of delayed cerebral ischemia in patients with subarachnoid hemorrhage,” Journal of NeuroInterventional Surgery, 2018.
    [Bibtex] 
    @article{Ramosneurintsurg-2018-014258,
Author = {Ramos, Lucas Alexandre and van der Steen, Wessel E and Sales Barros, Renan and Majoie, Charles B L M and van den Berg, Rene and Verbaan, Dagmar and Vandertop, W Peter and Zijlstra, I Jsbrand Andreas Jan and Zwinderman, A H and Strijkers, Gustav J and Olabarriaga, Silvia Delgado and Marquering, Henk A},
Doi = {10.1136/neurintsurg-2018-014258},
Eprint = {https://jnis.bmj.com/content/early/2018/11/10/neurintsurg-2018-014258.full.pdf},
Issn = {1759-8478},
Journal = {{Journal of NeuroInterventional Surgery}},
Publisher = {{British Medical Journal Publishing Group}},
Title = {Machine learning improves prediction of delayed cerebral ischemia in patients with subarachnoid hemorrhage},
Url = {https://jnis.bmj.com/content/early/2018/11/10/neurintsurg-2018-014258},
Year = {2018},}

2017

  • [DOI] A. J. van Altena, P. D. Moerland, A. H. Zwinderman, and S. D. Olabarriaga, “Analysis of the term `big data’: Usage in biomedical publications,” in 2017 IEEE International Conference on Big Data (Big Data), 2017, pp. 1253-1258.
    [Bibtex] 
    @inproceedings{8258051,
Author = {A. J. van Altena and P. D. Moerland and A. H. Zwinderman and S. D. Olabarriaga},
Booktitle = {{2017 IEEE International Conference on Big Data (Big Data)}},
Doi = {10.1109/BigData.2017.8258051},
Month = {Dec},
Pages = {1253-1258},
Title = {{Analysis of the term `big data': Usage in biomedical publications}},
Year = {2017},}
  • A. J. van Altena and S. Delgado Olabarriaga, “Predicting publication inclusion for diagnostic accuracy test reviews using random forests and topic modelling,” in Working Notes of CLEF 2017 – Conference and Labs of the Evaluation Forum, 2017, p. 1–9.
    [Bibtex] 
    @inproceedings{van2017predicting,
Author = {van Altena, Allard Jan-Jaap and Delgado Olabarriaga, S\'{\i}lvia},
Booktitle = {{Working Notes of CLEF 2017 - Conference and Labs of the Evaluation Forum}},
Location = {Dublin, Ireland},
Pages = {1--9},
Series = {CLEF 2017},
Title = {Predicting publication inclusion for diagnostic accuracy test reviews using random forests and topic modelling},
Url = {http://ceur-ws.org/Vol-1866/paper_115.pdf},
Year = {2017},}
  • [DOI] A. J. van Altena and S. Delgado Olabarriaga, “(Bio)Medical Publications in the Age of Big Data: Yes, They Are Different,” in Proceedings of the 2017 International Conference on Digital Health, New York, NY, USA, 2017, p. 221–222.
    [Bibtex] 
    @inproceedings{Altena:2017:MPA:3079452.3079474,
Acmid = {3079474},
Address = {New York, NY, USA},
Author = {van Altena, Allard Jan-Jaap and Delgado Olabarriaga, S\'{\i}lvia},
Booktitle = {{Proceedings of the 2017 International Conference on Digital Health}},
Doi = {10.1145/3079452.3079474},
Isbn = {978-1-4503-5249-9},
Location = {London, United Kingdom},
Numpages = {2},
Pages = {221--222},
Publisher = {ACM},
Series = {DH '17},
Title = {{(Bio)Medical Publications in the Age of Big Data: Yes, They Are Different}},
Url = {http://doi.acm.org/10.1145/3079452.3079474},
Year = {2017},}
  • [DOI] T. Glatard, M. Rousseau, S. Camarasu-Pop, R. Adalat, N. Beck, S. Das, R. Ferreira da Silva, N. Khalili-Mahani, V. Korkhov, P. Quirion, P. Rioux, S. D. Olabarriaga, P. Bellec, and A. C. Evans, “Software architectures to integrate workflow engines in science gateways,” Future Generation Computer Systems, vol. 75, pp. 239-255, 2017.
    [Bibtex] 
    @article{Glatard2017,
Author = {Glatard,T and Rousseau, Marc-{\'E}tienne and Camarasu-Pop,Sorina and Adalat,Reza and Beck, Natacha and Das, Samir and Ferreira da Silva, Rafael and Khalili-Mahani, Najmeh and Korkhov, Vladimir and Quirion,Pierre-Olivier and Rioux, Pierre and Olabarriaga, S{\'\i}lvia D. and Bellec,Pierre and Evans,Alan C.},
Doi = {http://dx.doi.org/10.1016/j.future.2017.01.005},
Issn = {0167-739X},
Journal = {{Future Generation Computer Systems}},
Keywords = {Software architectures},
Month = {October},
Pages = {239-255},
Title = {Software architectures to integrate workflow engines in science gateways},
Url = {http://www.sciencedirect.com/science/article/pii/S0167739X17300249},
Volume = {75},
Year = {2017},}
  • [DOI] C. P. M. P. Koolschijn, M. W. A. Caan, J. Teeuw, S. D. Olabarriaga, and H. M. Geurts, “Age-related differences in autism: the case of white matter microstructure,” Human Brain Mapping, vol. 38, iss. 1, p. 82–96, 2017.
    [Bibtex] 
    @article{Koolschijn:2017,
Author = {Koolschijn, P C{\'e}dric M. P. and Caan, Matthan W. A. and Teeuw, Jalmar and Olabarriaga, S{\'\i}lvia D. and Geurts, Hilde M.},
Doi = {10.1002/hbm.23345},
Isbn = {1097-0193},
Journal = {{Human Brain Mapping}},
Journal1 = {Hum. Brain Mapp.},
Number = {1},
Pages = {82--96},
Title = {Age-related differences in autism: The case of white matter microstructure},
Ty = {JOUR},
Url = {http://dx.doi.org/10.1002/hbm.23345},
Volume = {38},
Year = {2017},}
  • [DOI] K. Maheshwari, D. Katz, S. D. Olabarriaga, J. Wozniak, and D. Thain, “Report on the first workshop on negative and null results in eScience,” Concurrency and Computation: Practice and Experience, vol. 29, iss. 2, p. e3908–n/a, 2017.
    [Bibtex] 
    @article{Maheshwari:2017,
Author = {Maheshwari, Ketan and Katz, Daniel and Olabarriaga, Silvia D. and Wozniak, Justin and Thain, Douglas},
Doi = {10.1002/cpe.3908},
Isbn = {1532-0634},
Journal = {{Concurrency and Computation: Practice and Experience}},
Journal1 = {Concurrency Computat.: Pract. Exper.},
Number = {2},
Pages = {e3908--n/a},
Title = {Report on the first workshop on negative and null results in {eScience}},
Ty = {JOUR},
Url = {http://dx.doi.org/10.1002/cpe.3908},
Volume = {29},
Year = {2017},}
  • F. Oliveira Gutierrez, P. De Geest, A. Jongejan, S. Repping, J. T. van den Berg, A. H. C. van Kampen, and S. Olabarriaga, “FAIR Sequencing Data Repository based on iRODS,” in iRODS User Group Meeting, Utrecht, 2017.
    [Bibtex] 
    @inproceedings{gutierrez2017,
Address = {Utrecht},
Author = {Oliveira Gutierrez, F. and De Geest, P. and Jongejan, A. and Repping, S. and van den Berg, J.T. and van Kampen, A.H.C. and Olabarriaga, S},
Booktitle = {{iRODS User Group Meeting}},
Month = {June},
Title = {{FAIR Sequencing Data Repository based on iRODS}},
Url = {https://irods.org/uploads/2017/Gutierrez-AMC-FAIR_Sequencing_Data_Repository-paper.pdf},
Year = {2017},}

2016

  • [DOI] A. J. van Altena, P. D. Moerland, A. H. Zwinderman, and S. D. Olabarriaga, “Understanding big data themes from scientific biomedical literature through topic modeling,” Journal of Big Data, vol. 3, iss. 1, p. 23, 2016.
    [Bibtex] 
    @article{vanAltena2016,
Author = {van Altena, Allard J. and Moerland, Perry D. and Zwinderman, Aeilko H. and Olabarriaga, S{\'\i}lvia D.},
Doi = {10.1186/s40537-016-0057-0},
Issn = {2196-1115},
Journal = {{Journal of Big Data}},
Number = {1},
Pages = {23},
Title = {Understanding big data themes from scientific biomedical literature through topic modeling},
Url = {http://dx.doi.org/10.1186/s40537-016-0057-0},
Volume = {3},
Year = {2016},}
  • [DOI] R. S. Barros, S. D. Olabarriaga, J. Borst, M. A. A. van Walderveen, J. S. Posthuma, G. J. Streekstra, M. van Herk, C. B. L. M. Majoie, and H. A. Marquering, “Dynamic CT perfusion image data compression for efficient parallel processing,” Medical & Biological Engineering & Computing, vol. 54, iss. 2, p. 463–473, 2016.
    [Bibtex] 
    @article{Barros2016,
Author = {Barros, Renan Sales and Olabarriaga, Silvia Delgado and Borst, Jordi and van Walderveen, Marianne A. A. and Posthuma, Jorrit S. and Streekstra, Geert J. and van Herk, Marcel and Majoie, Charles B. L. M. and Marquering, Henk A.},
Doi = {10.1007/s11517-015-1331-6},
Issn = {1741-0444},
Journal = {{Medical {\&} Biological Engineering {\&} Computing}},
Number = {2},
Pages = {463--473},
Title = {{Dynamic CT perfusion image data compression for efficient parallel processing}},
Url = {http://dx.doi.org/10.1007/s11517-015-1331-6},
Volume = {54},
Year = {2016},}
  • [DOI] M. M. Jaghoori, B. Bleijlevens, and S. D. Olabarriaga, “1001 Ways to run AutoDock Vina for virtual screening,” Journal of Computer-Aided Molecular Design, vol. 30, iss. 3, p. 237–249, 2016.
    [Bibtex] 
    @article{Jaghoori:2016aa,
Author = {Jaghoori, Mohammad Mahdi and Bleijlevens, Boris and Olabarriaga, Silvia D.},
Doi = {10.1007/s10822-016-9900-9},
Id = {Jaghoori2016},
Isbn = {1573-4951},
Journal = {{Journal of Computer-Aided Molecular Design}},
Number = {3},
Pages = {237--249},
Title = {{1001 Ways to run AutoDock Vina for virtual screening}},
Ty = {JOUR},
Url = {http://dx.doi.org/10.1007/s10822-016-9900-9},
Volume = {30},
Year = {2016},}
  • [DOI] S. Olabarriaga and N. Wilkins-Diehr, “GCE15 special issue conference publications,” Concurrency and Computation: Practice and Experience, vol. 28, iss. 7, p. 1949–1951, 2016.
    [Bibtex] 
    @article{CPE:CPE3743,
Author = {Olabarriaga, Silvia and Wilkins-Diehr, Nancy},
Doi = {10.1002/cpe.3743},
Issn = {1532-0634},
Journal = {{Concurrency and Computation: Practice and Experience}},
Note = {CPE-15-0507},
Number = {7},
Pages = {1949--1951},
Title = {{GCE15} Special Issue Conference Publications},
Url = {http://dx.doi.org/10.1002/cpe.3743},
Volume = {28},
Year = {2016},}
  • G. Pierantoni, D. Frost, S. Gesing, S. Olabarriaga, G. Tertyansky, M. Jaghoori, and J. Arshad, “A Model for Information and Action Flows Connecting Science Gateways to Distributed Computing Infrastructures,” in Proc. of IWSG 2016 (8th International Workshop on Science Gateways), Rome, 2016.
    [Bibtex] 
    @inproceedings{Gab2016,
Address = {Rome},
Author = {Gabriele Pierantoni and Dermot Frost and Sandra Gesing and Silvia Olabarriaga and Gabor Tertyansky and Mahdi Jaghoori and Junaid Arshad},
Booktitle = {{Proc. of IWSG 2016 (8th International Workshop on Science Gateways)}},
Month = {June},
Title = {{A Model for Information and Action Flows Connecting Science Gateways to Distributed Computing Infrastructures}},
Url = {http://ceur-ws.org/Vol-1871/paper1.pdf},
Year = {2016},}
  • S. Shahand and S. D. Olabarriaga, “Rosemary: A Flexible Programming Framework to Build Science Gateways,” in Proc. of IWSG 2016 (8th International Workshop on Science Gateways), Rome, 2016.
    [Bibtex] 
    @inproceedings{Shahan2016,
Address = {Rome},
Author = {Shahand, Shayan and Olabarriaga, Silvia D},
Booktitle = {{Proc. of IWSG 2016 (8th International Workshop on Science Gateways)}},
Month = {June},
Title = {{Rosemary: A Flexible Programming Framework to Build Science Gateways}},
Url = {http://ceur-ws.org/Vol-1871/paper3.pdf},
Year = {2016},}

2015

  • [DOI] R. S. Barros, J. Borst, S. Kleynenberg, C. Badr, R. Ganji, H. de Bliek, L. Zeng-Eyindanga, H. van den Brink, C. Majoie, H. Marquering, and S. D. Olabarriaga, “Remote Collaboration, Decision Support, and On-Demand Medical Image Analysis for Acute Stroke Care,” in Service Oriented and Cloud Computing: 4th European Conference, ESOCC 2015, Taormina, Italy, September 15-17, 2015, Proceedings, Cham, 2015, p. 214–225.
    [Bibtex] 
    @inproceedings{Barros2015,
Address = {Cham},
Author = {Barros, Renan Sales and Borst, Jordi and Kleynenberg, Steven and Badr, C{\'e}line and Ganji, Rama-Rao and de Bliek, Hubrecht and Zeng-Eyindanga, Landry-St{\'e}phane and van den Brink, Henk and Majoie, Charles and Marquering, Henk and Olabarriaga, S{\'\i}lvia Delgado},
Booktitle = {{Service Oriented and Cloud Computing: 4th European Conference, ESOCC 2015, Taormina, Italy, September 15-17, 2015, Proceedings}},
Doi = {10.1007/978-3-319-24072-5_15},
Editor = {Dustdar, Schahram and Leymann, Frank and Villari, Massimo},
Isbn = {978-3-319-24072-5},
Pages = {214--225},
Publisher = {Springer International Publishing},
Title = {{Remote Collaboration, Decision Support, and On-Demand Medical Image Analysis for Acute Stroke Care}},
Url = {http://dx.doi.org/10.1007/978-3-319-24072-5_15},
Year = {2015},}
  • M. Caan, J. Teeuw, S. Shahand, M. M. Jaghoori, J. Huguet, A. van Altena, and S. D. Olabarriaga, “A neuroscience gateway for handling and processing population imaging studies,” in Proceedings of the 1st MICCAI 2015 Workshop on Management and Processing of images for Population Imaging (MICCAI MAPPING 2015), 2015, pp. 15-22.
    [Bibtex] 
    @inproceedings{caan2015,
Author = {Caan, Matthan and Teeuw, Jalmar and Shahand, Shayan and Jaghoori, Mohammad Mahdi and Huguet, Jordi and van Altena, Allard and Olabarriaga, Silvia D},
Booktitle = {{Proceedings of the 1st MICCAI 2015 Workshop on Management and Processing of images for Population Imaging (MICCAI MAPPING 2015)}},
Organization = {MICCAI},
Pages = {15-22},
Title = {A neuroscience gateway for handling and processing population imaging studies},
url = {https://project.inria.fr/fli/en/mapping-workshop},
Year = {2015},}
  • [DOI] M. M. Jaghoori, S. Shahand, and S. D. Olabarriaga, “Processing Manager for Science Gateways,” in Science Gateways (IWSG), 2015 7th International Workshop on, 2015, pp. 1-7.
    [Bibtex] 
    @inproceedings{7217921,
Author = {M. M. Jaghoori and S. Shahand and S. D. Olabarriaga},
Booktitle = {{Science Gateways (IWSG), 2015 7th International Workshop on}},
Doi = {10.1109/IWSG.2015.9},
Month = {June},
Pages = {1-7},
Title = {{Processing Manager for Science Gateways}},
Year = {2015},
Bdsk-Url-1 = {http://dx.doi.org/10.1109/IWSG.2015.9}}
  • [DOI] M. M. Jaghoori, A. J. van Altena, B. Bleijlevens, S. Ramezani, J. L. Font, and S. D. Olabarriaga, “A multi-infrastructure gateway for virtual drug screening,” Concurrency and Computation: Practice and Experience, vol. 27, iss. 16, p. 4478–-4490, 2015.
    [Bibtex] 
    @article{CPE:CPE3498,
Author = {Jaghoori, Mohammad Mahdi and van Altena, Allard J. and Bleijlevens, Boris and Ramezani, Sara and Font, Juan Luis and Olabarriaga, Silvia D.},
Doi = {10.1002/cpe.3498},
Issn = {1532-0634},
Journal = {{Concurrency and Computation: Practice and Experience}},
Keywords = {science gateway, eScience, drug discovery, virtual screening, grid computing, Hadoop},
Number = {16},
Pages = {4478---4490},
Title = {A multi-infrastructure gateway for virtual drug screening},
Url = {http://dx.doi.org/10.1002/cpe.3498},
Volume = {27},
Year = {2015},}
  • R. Sales Barros, E. Bennink, J. Posthuma, J. Oosterbroek, C. Majoie, H. de Jong, S. Olabarriaga, and H. Marquering, “High Performance Analysis of Compressed Dynamic CT Perfusion Image Data for Acute Care of Ischemic Stroke,” in 8th International Workshop on High Performance Computing for Biomedical Image Analysis (HPC-MICCAI), 2015.
    [Bibtex] 
    @inproceedings{barros2015b,
Author = {Sales Barros, Renan and Bennink, Edwin and Posthuma, Jorrit and Oosterbroek, Jaap and Majoie, Charles and de Jong, Hugo and Olabarriaga, Silvia and Marquering, Henk},
Booktitle = {{8th International Workshop on High Performance Computing for Biomedical Image Analysis (HPC-MICCAI)}},
Organization = {MICCAI},
Title = {{High Performance Analysis of Compressed Dynamic CT Perfusion Image Data for Acute Care of Ischemic Stroke}},
Year = {2015}}
  • [DOI] S. Shahand, J. van Duffelen, and S. D. Olabarriaga, “Reflections on science gateways sustainability through the business model canvas: case study of a neuroscience gateway,” Concurrency and Computation: Practice and Experience, p. n/a–n/a, 2015.
    [Bibtex] 
    @article{shahand:2015ac,
Author = {Shahand, S. and van Duffelen, J. and Olabarriaga, S. D.},
Doi = {10.1002/cpe.3524},
Issn = {1532-0634},
Journal = {{Concurrency and Computation: Practice and Experience}},
Pages = {n/a--n/a},
Title = {Reflections on science gateways sustainability through the business model canvas: case study of a neuroscience gateway},
Url = {http://dx.doi.org/10.1002/cpe.3524},
Year = {2015},}
  • [DOI] S. Shahand, A. Benabdelkader, M. M. Jaghoori, M. al Mourabit, J. Huguet, M. W. A. Caan, A. H. C. van Kampen, and S. D. Olabarriaga, “A Data-centric Neuroscience Gateway: Design, Implementation, and Experiences,” Concurrency and Computation: Practice and Experience, vol. 27, iss. 2, p. 489–506, 2015.
    [Bibtex] 
    @article{shahand:2015aa,
Author = {Shahand, Shayan and Benabdelkader, Ammar and Jaghoori, Mohammad Mahdi and Mourabit, Mostapha al and Huguet, Jordi and Caan, Matthan W.A. and van Kampen, Antoine H.C. and Olabarriaga, S{\'\i}lvia D.},
Doi = {10.1002/cpe.3281},
Issn = {1532-0634},
Journal = {{Concurrency and Computation: Practice and Experience}},
Number = {2},
Pages = {489--506},
Title = {{A Data-centric Neuroscience Gateway: Design, Implementation, and Experiences}},
Url = {http://dx.doi.org/10.1002/cpe.3281},
Volume = {27},
Year = {2015},}
  • [DOI] S. Shahand, A. H. C. van Kampen, and S. D. Olabarriaga, “Science Gateway Canvas: A business reference model for Science Gateways,” in Proceedings of the Science of Cyberinfrastructure: Research, Experience, Applications and Models, Portland, OR, USA, 2015, pp. 45-52.
    [Bibtex] 
    @inproceedings{shahand:2015ab,
Address = {Portland, OR, USA},
Author = {Shahand, Shayan and van Kampen, Antoine H. C. and Olabarriaga, S\'{\i}lvia D.},
Booktitle = {{Proceedings of the Science of Cyberinfrastructure: Research, Experience, Applications and Models}},
Doi = {10.1145/2753524.2753527},
Pages = {45-52},
Publisher = {ACM New York},
Series = {SCREAM'15},
Title = {{Science Gateway Canvas: A business reference model for Science Gateways}},
Url = {http://dx.doi.org/10.1145/2753524.2753527},
Year = {2015},}
  • [DOI] J. Teeuw, M. W. A. Caan, and S. D. Olabarriaga, “Robust Automated White Matter Pathway Reconstruction for Large Studies,” in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015: 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part I, Cham, 2015, p. 101–108.
    [Bibtex] 
    @inproceedings{Teeuw2015,
Address = {Cham},
Author = {Teeuw, Jalmar and Caan, Matthan W. A. and Olabarriaga, Silvia D.},
Booktitle = {{Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015: 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part I}},
Doi = {10.1007/978-3-319-24553-9_13},
Editor = {Navab, Nassir and Hornegger, Joachim and Wells, M. William and Frangi, F. Alejandro},
Isbn = {978-3-319-24553-9},
Pages = {101--108},
Publisher = {Springer International Publishing},
Title = {{Robust Automated White Matter Pathway Reconstruction for Large Studies}},
Url = {http://dx.doi.org/10.1007/978-3-319-24553-9_13},
Year = {2015},}

2014

  • [DOI] A. W. G. Buijink, M. W. A. Caan, F. M. Contarino, R. P. Schuurman, P. van den Munckhof, R. M. A. de Bie, S. Olabarriaga, J. D. Speelman, and A. F. van Rootselaar, “Structural changes in cerebellar outflow tracts after thalamotomy in essential tremor,” PARKINSONISM & RELATED DISORDERS, vol. 20, iss. 5, pp. 554-7, 2014.
    [Bibtex] 
    @article{Buijink,
Author = {Buijink, Arthur W. G. and Caan, Matthan W. A. and Contarino, M. Fiorella and Schuurman, P. Richard and van den Munckhof, Pepijn and de Bie, Rob M. A. and Olabarriaga, Silvia and Speelman, Johannes D. and van Rootselaar, Anne Fleur},
Doi = {10.1016/j.parkreldis.2014.02.020},
Journal = {{PARKINSONISM & RELATED DISORDERS}},
Number = {5},
Pages = {554-7},
Title = {Structural changes in cerebellar outflow tracts after thalamotomy in essential tremor},
Volume = {20},
Year = {2014},}
  • M. M. Jaghoori, A. V. J. Altena, B. Bleijlevens, and S. D. Olabarriaga, “A Grid-Enabled Virtual Screening Gateway,” in Science Gateways (IWSG), 2014 6th International Workshop on, 2014, p. 24–29.
    [Bibtex] 
    @inproceedings{jaghoori2014grid,
Author = {Jaghoori, Mohammad Mahdi and Altena, Allard J Van and Bleijlevens, Boris and Olabarriaga, Silvia D},
Booktitle = {{Science Gateways (IWSG), 2014 6th International Workshop on}},
Organization = {IEEE},
Pages = {24--29},
Title = {{A Grid-Enabled Virtual Screening Gateway}},
Year = {2014}}
  • [DOI] M. M. Jaghoori, S. Ramezani, and S. D. Olabarriaga, “User-oriented Partial Result Evaluation in Workflow-based Science Gateways,” in Proceedings of the 9th Workshop on Workflows in Support of Large-Scale Science, Piscataway, NJ, USA, 2014, p. 70–81.
    [Bibtex] 
    @inproceedings{Jaghoori:2014:UPR:2691175.2691186,
Address = {Piscataway, NJ, USA},
Author = {Jaghoori, Mohammad Mahdi and Ramezani, Sara and Olabarriaga, Silvia D.},
Booktitle = {{Proceedings of the 9th Workshop on Workflows in Support of Large-Scale Science}},
Doi = {10.1109/WORKS.2014.7},
Pages = {70--81},
Publisher = {IEEE Press},
Series = {WORKS '14},
Title = {{User-oriented Partial Result Evaluation in Workflow-based Science Gateways}},
Year = {2014},}
  • S. Olabarriaga, G. Pierantoni, G. Taffoni, E. Sciacca, M. Jaghoori, V. Korkhov, G. Castelli, C. Vuerli, U. Becciani, E. Carley, and others, “Scientific workflow management–for whom?,” in e-Science (e-Science), 2014 IEEE 10th International Conference on, 2014, p. 298–305.
    [Bibtex] 
    @inproceedings{olabarriaga2014scientific,
Author = {Olabarriaga, Silvia and Pierantoni, Gabrielle and Taffoni, Giuliano and Sciacca, Eva and Jaghoori, Mahdi and Korkhov, Vladimir and Castelli, Giuliano and Vuerli, Claudio and Becciani, Ugo and Carley, Eoin and others},
Booktitle = {{e-Science (e-Science), 2014 IEEE 10th International Conference on}},
Organization = {IEEE},
Pages = {298--305},
Title = {Scientific Workflow Management--For Whom?},
Year = {2014}}
  • [DOI] S. D. Olabarriaga, A. Benabdelkader, M. W. A. Caan, M. M. Jaghoori, J. Krüger, L. de la Garza, C. Mohr, B. Schubert, A. Danezi, and T. Kiss, “WS-PGRADE/gUSE-Based Science Gateways in Teaching,” in Science Gateways for Distributed Computing Infrastructures, P. Kacsuk, Ed., Springer international publishing, 2014, pp. 223-234.
    [Bibtex] 
    @incollection{olabarriaga,
Author = {Olabarriaga, S{\'\i}lvia D. and Benabdelkader, Ammar and Caan, Matthan W.A. and Jaghoori, Mohammad Mahdi and Kr{\"u}ger, Jens and de la Garza, Luis and Mohr, Christopher and Schubert, Benjamin and Danezi, Anatoli and Kiss, Tamas},
Booktitle = {{Science Gateways for Distributed Computing Infrastructures}},
Doi = {10.1007/978-3-319-11268-8_16},
Editor = {Kacsuk, P{\'e}ter},
Pages = {223-234},
Publisher = {Springer International Publishing},
Title = {{WS-PGRADE/gUSE-Based Science Gateways in Teaching}},
Year = {2014},}
  • [DOI] R. Sales Barros, S. van Geldermalsen, A. M. M. Boers, A. Belloum, H. A. Marquering, and S. Olabarriaga, “Heterogeneous platform programming for high performance medical imaging processing,” in Euro-Par 2013: Parallel Processing Workshops, D. an Mey, M. Alexander, P. Bientinesi, M. Cannataro, C. Clauss, A. Costan, G. Kecskemeti, C. Morin, L. Ricci, J. Sahuquillo, M. Schulz, V. Scarano, S. Scott, and J. Weidendorfer, Eds., Springer berlin heidelberg, 2014, vol. 8374, pp. 301-310.
    [Bibtex] 
    @incollection{Barros:2014aa,
Author = {Sales Barros, Renan and van Geldermalsen, Sytse and Boers, Anna M.M. and Belloum, AdamS.Z. and Marquering, Henk A. and Olabarriaga, Silvia},
Booktitle = {{Euro-Par 2013: Parallel Processing Workshops}},
Doi = {10.1007/978-3-642-54420-0_30},
Editor = {an Mey, Dieter and Alexander, Michael and Bientinesi, Paolo and Cannataro, Mario and Clauss, Carsten and Costan, Alexandru and Kecskemeti, Gabor and Morin, Christine and Ricci, Laura and Sahuquillo, Julio and Schulz, Martin and Scarano, Vittorio and Scott, StephenL. and Weidendorfer, Josef},
Pages = {301-310},
Publisher = {Springer Berlin Heidelberg},
Series = {Lecture Notes in Computer Science},
Title = {Heterogeneous Platform Programming for High Performance Medical Imaging Processing},
Volume = {8374},
Year = {2014},}
  • [DOI] S. Shahand and S. D. Olabarriaga, “Initial steps in analyzing science gateways sustainability through business model canvas: a use case for the computational neuroscience gateway,” in Proceedings of the 9th Gateway Computing Environments Workshop, Piscataway, NJ, USA, 2014, p. 5–8.
    [Bibtex] 
    @inproceedings{shahand:2014ab,
Address = {Piscataway, NJ, USA},
Author = {Shahand, Shayan and Olabarriaga, S\'{\i}lvia D.},
Booktitle = {{Proceedings of the 9th Gateway Computing Environments Workshop}},
Doi = {10.1109/GCE.2014.16},
Pages = {5--8},
Publisher = {IEEE Press},
Series = {GCE '14},
Title = {Initial Steps in Analyzing Science Gateways Sustainability Through Business Model Canvas: A Use Case for the Computational Neuroscience Gateway},
Year = {2014},}
  • [DOI] S. Shahand, M. Jaghoori, A. Benabdelkader, J. Font-Calvo, J. Huguet, M. Caan, A. van Kampen, and S. Olabarriaga, “Computational Neuroscience Gateway: A Science Gateway Based on the WS-PGRADE/gUSE,” in Science Gateways for Distributed Computing Infrastructures, P. Kacsuk, Ed., Springer international publishing, 2014, pp. 139-149.
    [Bibtex] 
    @incollection{shahand:2014ac,
Author = {Shahand, Shayan and Jaghoori, MohammadMahdi and Benabdelkader, Ammar and Font-Calvo, JuanLuis and Huguet, Jordi and Caan, MatthanW.A. and van Kampen, AntoineH.C. and Olabarriaga, S{\'\i}lviaD.},
Booktitle = {{Science Gateways for Distributed Computing Infrastructures}},
Doi = {10.1007/978-3-319-11268-8_10},
Editor = {Kacsuk, P{\'e}ter},
Pages = {139-149},
Publisher = {Springer International Publishing},
Title = {{Computational Neuroscience Gateway: A Science Gateway Based on the WS-PGRADE/gUSE}},
Year = {2014},}
  • [DOI] G. Terstyanszky, T. Kiss, V. Korkhov, and S. D. Olabarriaga, “Analyzing and modeling of medical data on distributed computing infrastructures,” in 2014 47th Hawaii International Conference on System Sciences, 2014, pp. 2918-2927.
    [Bibtex] 
    @inproceedings{6758964,
Author = {G. Terstyanszky and T. Kiss and V. Korkhov and S. D. Olabarriaga},
Booktitle = {{2014 47th Hawaii International Conference on System Sciences}},
Doi = {10.1109/HICSS.2014.364},
Issn = {1530-1605},
Month = {Jan},
Pages = {2918-2927},
Title = {Analyzing and Modeling of Medical Data on Distributed Computing Infrastructures},
Year = {2014},}

2013

  • [DOI] Z. Farkas, P. Kacsuk, A. Balasko, K. Karoczkai, M. Santcroos, and S. D. Olabarriaga, “Data bridge: solving diverse data access in scientific applications,” in Proceedings of 5th International Workshop on Science Gateways (IWSG), 2013.
    [Bibtex] 
    @inproceedings{Farkas,
Author = {Farkas, Zoltan and Kacsuk, Peter and Balasko, Akos and Karoczkai, Krisztian and Santcroos, Mark and Olabarriaga, S. D.},
Booktitle = {{Proceedings of 5th International Workshop on Science Gateways (IWSG)}},
Doi = {http://ceur-ws.org/Vol-993/paper12.pdf},
Title = {Data Bridge: solving diverse data access in scientific applications},
Year = {2013},}
  • [DOI] V. Korkhov, D. Krefting, T. Kukla, G. Z. Terstyanszky, M. W. A. Caan, and S. D. Olabarriaga, “Exploring Workflow Interoperability for Neuroimage Analysis on the SHIWA Platform,” Journal of Grid Computing, vol. 11, iss. 3, pp. 505-522, 2013.
    [Bibtex] 
    @article{Korkhov,
Author = {Korkhov, Vladimir and Krefting, Dagmar and Kukla, Tamas and Terstyanszky, Gabor Z. and Caan, Matthan W.A. and Olabarriaga, S.D.},
Doi = {10.1007/s10723-013-9262-7},
Journal = {{Journal of Grid Computing}},
Number = {3},
Pages = {505-522},
Title = {{Exploring Workflow Interoperability for Neuroimage Analysis on the SHIWA Platform}},
Volume = {11},
Year = {2013},}
  • [DOI] B. de Kwaasteniet, E. Ruhe, M. Caan, M. Rive, S. Olabarriaga, M. Groefsema, L. Heesink, G. van Wingen, and D. Denys, “Relation between structural and functional connectivity in major depressive disorder,” Biological Psychiatry, vol. 74, iss. 1, pp. 40-47, 2013.
    [Bibtex] 
    @article{kwaasteniet:2013aa,
Author = {Bart de Kwaasteniet and Eric Ruhe and Matthan Caan and Maaike Rive and Silvia Olabarriaga and Martine Groefsema and Lieke Heesink and Guido van Wingen and Damiaan Denys},
Doi = {10.1016/j.biopsych.2012.12.024},
Journal = {{Biological Psychiatry}},
Number = {1},
Pages = {40 - 47},
Title = {Relation Between Structural and Functional Connectivity in Major Depressive Disorder},
Volume = {74},
Year = {2013},}
  • [DOI] S. Madougou, S. Shahand, M. Santcroos, B. van Schaik, A. Benabdelkader, A. van Kampen, and S. Olabarriaga, “Characterizing workflow-based activity on a production e-infrastructure using provenance data,” Future Generation Computer Systems, vol. 29, iss. 8, pp. 1931-1942, 2013.
    [Bibtex] 
    @article{madougou:2013aa,
Author = {Souley Madougou and Shayan Shahand and Mark Santcroos and Barbera van Schaik and Ammar Benabdelkader and Antoine van Kampen and Silvia Olabarriaga},
Doi = {10.1016/j.future.2013.04.019},
Journal = {{Future Generation Computer Systems}},
Number = {8},
Pages = {1931 - 1942},
Title = {Characterizing workflow-based activity on a production e-infrastructure using provenance data},
Volume = {29},
Year = {2013},}
  • [DOI] E. Mouw, G. Van ‘T Noordende, B. Louter, and S. D. Olabarriaga, “A model-based information security risk assessment method for science gateways,” in Proceedings of International 5th Workshop on Science Gateways (IWSG), 2013.
    [Bibtex] 
    @inproceedings{Mouw,
Author = {Mouw, Evert and Van 'T Noordende, Guido and Louter, B. and Olabarriaga, S. D.},
Booktitle = {{Proceedings of International 5th Workshop on Science Gateways (IWSG)}},
Doi = {http://ceur-ws.org/Vol-993/paper15.pdf},
Title = {A Model-based Information Security Risk Assessment method for Science Gateways},
Year = {2013},}
  • [DOI] S. D. Olabarriaga, M. M. Jaghoori, V. Korkhov, B. van Schaik, and A. van Kampen, “Understanding workflows for distributed computing: nitty-gritty details,” in Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science, New York, NY, USA, 2013, p. 68–76.
    [Bibtex] 
    @inproceedings{Olabarriaga:2013:UWD:2534248.2534255,
Address = {New York, NY, USA},
Author = {Olabarriaga, Silvia D. and Jaghoori, Mohammad Mahdi and Korkhov, Vladimir and van Schaik, Barbera and van Kampen, Antoine},
Booktitle = {{Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science}},
Doi = {10.1145/2534248.2534255},
Pages = {68--76},
Publisher = {ACM},
Series = {WORKS '13},
Title = {Understanding Workflows for Distributed Computing: Nitty-gritty Details},
Year = {2013},}
  • B. D. Peters, M. W. J. Machielsen, W. P. Hoen, M. W. A. Caan, A. K. Malhotra, P. R. Szeszko, M. Duran, S. D. Olabarriaga, and L. de Haan, “Polyunsaturated fatty acid concentration predicts myelin integrity in early-phase psychosis,” Schizophrenia Bulletin, vol. 39, iss. 4, pp. 830-838, 2013.
    [Bibtex] 
    @article{peters:2013aa,
Author = {Peters, Bart D. and Machielsen, Marise W. J. and Hoen, Wendela P. and Caan, Matthan W. A. and Malhotra, Anil K. and Szeszko, Philip R. and Duran, Marinus and Olabarriaga, Silvia D. and de Haan, Lieuwe},
Journal = {{Schizophrenia Bulletin}},
Number = {4},
Pages = {830-838},
Title = {Polyunsaturated Fatty Acid Concentration Predicts Myelin Integrity in Early-Phase Psychosis},
Volume = {39},
Year = {2013}}
  • A. Rienstra, P. F. C. Groot, P. E. J. Spaan, C. B. L. M. Majoie, A. J. Nederveen, G. J. M. Walstra, J. F. M. de Jonghe, W. A. van Gool, S. D. Olabarriaga, V. V. Korkhov, and B. Schmand, “Symptom validity testing in memory clinics: hippocampal-memory associations and relevance for diagnosing mild cognitive impairment,” Journal of Clinical and Experimental Neuropsychology, vol. 35, iss. 1, pp. 59-70, 2013.
    [Bibtex] 
    @article{rienstra:2013aa,
Author = {Rienstra, Anne and Groot, Paul F. C. and Spaan, Pauline E. J. and Majoie, Charles B. L. M. and Nederveen, Aart J. and Walstra, Gerard J. M. and de Jonghe, Jos F. M. and van Gool, Willem A. and Olabarriaga, Silvia D. and Korkhov, Vladimir V. and Schmand, Ben},
Journal = {{Journal of Clinical and Experimental Neuropsychology}},
Number = {1},
Pages = {59-70},
Title = {Symptom validity testing in memory clinics: Hippocampal-memory associations and relevance for diagnosing mild cognitive impairment},
Volume = {35},
Year = {2013}}
  • [DOI] M. Santcroos, B. D. C. van Schaik, S. Shahand, S. D. Olabarriaga, A. Luckow, and S. Jha, “Exploring dynamic enactment of scientific workflows using pilot-abstractions,” in Cluster, Cloud and Grid Computing (CCGrid), 2013 13th IEEE/ACM International Symposium on, 2013, pp. 311-318.
    [Bibtex] 
    @inproceedings{santcroos:2013aa,
Author = {Santcroos, M. and van Schaik, B.D.C. and Shahand, S. and Olabarriaga, S.D. and Luckow, A. and Jha, S.},
Booktitle = {{Cluster, Cloud and Grid Computing (CCGrid), 2013 13th IEEE/ACM International Symposium on}},
Doi = {10.1109/CCGrid.2013.17},
Pages = {311-318},
Title = {Exploring Dynamic Enactment of Scientific Workflows Using Pilot-Abstractions},
Year = {2013},}
  • [DOI] B. D. van Schaik, M. Santcroos, S. Madougou, A. Jongejan, A. H. van Kampen, and S. D. Olabarriaga, “e-Bioscience Solutions and Challenges for Next Generation Sequencing Experiments,” in Proceedings of 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2013, 2013, pp. 333-334.
    [Bibtex] 
    @inproceedings{vanSchaik,
Author = {van Schaik, Barbera DC and Santcroos, Mark and Madougou, Souley and Jongejan, Aldo and van Kampen, Antoine HC and Olabarriaga, S. D.},
Booktitle = {{Proceedings of 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2013}},
Doi = {http://iwbbio.ugr.es/papers/iwbbio_061.pdf},
Pages = {333-334},
Title = {{e-Bioscience Solutions and Challenges for Next Generation Sequencing Experiments}},
Year = {2013},}
  • S. Shahand, A. Benabdelkader, J. Huguet, M. Jaghouri, M. Santcroos, M. al Mourabit, P. F. C. Groot, M. W. A. Caan, A. H. C. van Kampen, and S. D. Olabarriaga, “A data-centric science gateway for computational neuroscience,” in Proceedings of the 5th International Workshop on Science Gateways, 2013.
    [Bibtex] 
    @inproceedings{shahand:2013aa,
Author = {Shahand, Shayan and Benabdelkader, Ammar and Huguet, Jordi and Jaghouri, Mahdi and Santcroos, Mark and al Mourabit, Mostapha and Groot, Paul F. C. and Caan, Matthan W. A. and van Kampen, Antoine H. C. and Olabarriaga, Silvia D.},
Booktitle = {{Proceedings of the 5th International Workshop on Science Gateways}},
Month = {June},
Title = {A Data-Centric Science Gateway for Computational Neuroscience},
Year = {2013}}

2012

  • [DOI] M. W. A. Caan, S. Shahand, F. M. Vos, A. H. C. van Kampen, and S. D. Olabarriaga, “Evolution of grid-based services for diffusion tensor image analysis,” Future Generation Computer Systems, vol. 28, iss. 8, pp. 1194-1204, 2012.
    [Bibtex] 
    @article{caan:2012aa,
Author = {M.W.A. Caan and S. Shahand and F.M. Vos and A.H.C. van Kampen and S.D. Olabarriaga},
Doi = {10.1016/j.future.2012.03.007},
Journal = {{Future Generation Computer Systems}},
Number = {8},
Pages = {1194 - 1204},
Title = {Evolution of grid-based services for Diffusion Tensor Image analysis},
Volume = {28},
Year = {2012},}
  • S. Madougou, M. Santcroos, A. Benabdelkader, B. D. van Schaik, S. Shahand, V. Korkhov, A. H. van Kampen, and S. D. Olabarriaga, “Provenance for distributed biomedical workflow execution,” in Studies in Health Technology and Informatics, 2012, p. 91–100.
    [Bibtex] 
    @inproceedings{madougou:2012aa,
Author = {Madougou, S. and Santcroos, M. and Benabdelkader, A. and van Schaik, B. D. and Shahand, S. and Korkhov, V. and van Kampen, A. H. and Olabarriaga, S. D.},
Booktitle = {{Studies in Health Technology and Informatics}},
Pages = {91--100},
Publisher = {{IOS Press}},
Title = {{{P}rovenance for distributed biomedical workflow execution}},
Volume = {175},
Year = {2012}}
  • [DOI] H. Marquering, J. Engelbers, P. Groot, C. Majoie, L. Beenen, A. van Kampen, and S. D. Olabarriaga, “Optimization and parallelization of the matched masked bone elimination method for cta.,” in Proceedings of the MICCAI workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications, 2012.
    [Bibtex] 
    @inproceedings{Marquering,
Author = {Marquering, Henk and Engelbers, Jeroen and Groot, Paul and Majoie, Charles and Beenen, Ludo and van Kampen, Antoine and Olabarriaga, S. D.},
Booktitle = {{Proceedings of the MICCAI workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications}},
Doi = {http://proton.polytech.unice.fr/DCICTIA-MICCAI12/dcictia12-proceedings.pdf},
Title = {Optimization and Parallelization of the Matched Masked Bone Elimination Method for CTA.},
Year = {2012},}
  • E. Mouw, G. van’t Noordende, A. H. van Kampen, B. Louter, M. Santcroos, and S. D. Olabarriaga, “Legal constraints on genetic data processing in European grids,” in Proceedings of HealthGrid 2012, 2012, p. 49–58.
    [Bibtex] 
    @inproceedings{mouw:2012aa,
Author = {Mouw, Evert and van't Noordende, G. and van Kampen, A. H. and Louter, B. and Santcroos, M. and Olabarriaga, S. D.},
Booktitle = {{Proceedings of HealthGrid 2012}},
Pages = {49--58},
Publisher = {{IOS Press}},
Title = {{{L}egal constraints on genetic data processing in {E}uropean grids}},
Volume = {175},
Year = {2012}}
  • M. Santcroos, S. D. Olabarriaga, D. S. Katz, and S. Jha, “Pilot abstractions for compute, data, and network,” in E-Science (e-Science), 2012 IEEE 8th International Conference on, 2012, pp. 1-2.
    [Bibtex] 
    @inproceedings{santcroos:2012aa,
Author = {Santcroos, M. and Olabarriaga, S.D. and Katz, D.S. and Jha, S.},
Booktitle = {{E-Science (e-Science), 2012 IEEE 8th International Conference on}},
Month = {oct.},
Pages = {1 -2},
Title = {Pilot abstractions for compute, data, and network},
Year = {2012}}
  • B. van Schaik, M. Santcroos, V. Korkhov, A. Jongejan, M Willemsen, A. van Kampen, and S. Olabarriaga, “Challenges in DNA sequence analysis on a production grid,” in Proceedings of EGI Community Forum 2012 / EMI Second Technical Conference, 2012.
    [Bibtex] 
    @inproceedings{vanschaikEGI2012,
Author = {BDC van Schaik and M Santcroos and V Korkhov and A Jongejan and M Willemsen, and AHC van Kampen and SD Olabarriaga},
Booktitle = {{Proceedings of EGI Community Forum 2012 / EMI Second Technical Conference}},
Editor = {EGI},
Organization = {EGI},
Series = {Proceedings of Science},
Title = {{Challenges in DNA sequence analysis on a production grid}},
Url = {https://pos.sissa.it/162/039/pdf},
Volume = {162},
Year = {2012},}
  • [DOI] S. Shahand, M. W. Caan, A. H. van Kampen, and S. D. Olabarriaga, “Integrated support for neuroscience research: from study design to publication,” in Studies in Health Technology and Informatics, 2012, p. 195–204.
    [Bibtex] 
    @inproceedings{shahand:2012aa,
Author = {Shahand, S. and Caan, M. W. and van Kampen, A. H. and Olabarriaga, S. D.},
Booktitle = {{Studies in Health Technology and Informatics}},
Doi = {10.3233/978-1-61499-054-3-195},
Pages = {195--204},
Publisher = {{IOS Press}},
Title = {{{I}ntegrated support for neuroscience research: from study design to publication}},
Volume = {175},
Year = {2012},}
  • [DOI] S. Shahand, M. Santcroos, A. H. C. Kampen, and S. Olabarriaga, “A grid-enabled gateway for biomedical data analysis,” Journal of Grid Computing, vol. 10, iss. 4, pp. 725-742, 2012.
    [Bibtex] 
    @article{shahand:2012ab,
Author = {Shahand, Shayan and Santcroos, Mark and Kampen, Antoine H.C. and Olabarriaga, S{\'\i}lvia},
Doi = {10.1007/s10723-012-9233-4},
Journal = {{Journal of Grid Computing}},
Number = {4},
Pages = {725-742},
Title = {A Grid-Enabled Gateway for Biomedical Data Analysis},
Volume = {10},
Year = {2012},}
  • M. de Vries, B. B. Oude Munnink, M. Deijs, M. Canuti, S. M. Koekkoek, R. Molenkamp, M. Bakker, S. Jurriaans, B. D. C. van Schaik, A. C. Luyf, S. D. Olabarriaga, A. H. C. van Kampen, and L. van der Hoek, “Performance of VIDISCA-454 in feces-suspensions and serum,” Viruses, vol. 4, iss. 8, p. 1328–1334, 2012.
    [Bibtex] 
    @article{vries:2012aa,
Author = {de Vries, Michel and Oude Munnink, Bas B. and Deijs, Martin and Canuti, Marta and Koekkoek, Sylvie M. and Molenkamp, Richard and Bakker, Margreet and Jurriaans, Suzanne and van Schaik, Barbera D. C. and Luyf, Angela C. and Olabarriaga, Silvia D. and van Kampen, Antoine H. C. and van der Hoek, Lia},
Journal = {Viruses},
Number = {8},
Pages = {1328--1334},
Title = {Performance of {VIDISCA-454} in Feces-Suspensions and Serum},
Volume = {4},
Year = {2012}}
  • G. A. van Wingen, E. Geuze, M. W. A. Caan, T. Kozicz, S. D. Olabarriaga, D. Denys, E. Vermetten, and G. Fernández, “Persistent and reversible consequences of combat stress on the mesofrontal circuit and cognition,” Proceedings of the National Academy of Sciences, vol. 109, iss. 38, pp. 15508-15513, 2012.
    [Bibtex] 
    @article{wingen:2012aa,
Author = {van Wingen, Guido A. and Geuze, Elbert and Caan, Matthan W. A. and Kozicz, Tam{\'a}s and Olabarriaga, Silvia D. and Denys, Damiaan and Vermetten, Eric and Fern{\'a}ndez, Guill{\'e}n},
Journal = {{Proceedings of the National Academy of Sciences}},
Number = {38},
Pages = {15508-15513},
Title = {Persistent and reversible consequences of combat stress on the mesofrontal circuit and cognition},
Volume = {109},
Year = {2012}}

2011

  • G. van ‘t Noordende, S. D. Olabarriaga, M. R. Koot, and C. T. A. M. de Laat, “Cloud, grid and high performance computing: emerging applications.” Igi global, 2011.
    [Bibtex] 
    @incollection{Noordende,
Author = {van 't Noordende, G and Olabarriaga, S.D. and Koot, M.R. and de Laat, Cees Th. A.M.},
Chapter = {Trusted Data Management for Grid-Based Medical Applications},
Publisher = {IGI Global},
Title = {Cloud, Grid and High Performance Computing: Emerging Applications},
Year = {2011}}
  • [DOI] V. Korkhov, D. Krefting, T. Kukla, G. Z. Terstyanszky, M. Caan, and S. D. Olabarriaga, “Exploring workflow interoperability tools for neuroimaging data analysis,” in Proceedings of the 6th Workshop on Workflows in Support of Large-scale Science, New York, NY, USA, 2011, p. 87–96.
    [Bibtex] 
    @inproceedings{Korkhov:2011:EWI:2110497.2110508,
Address = {New York, NY, USA},
Author = {Korkhov, Vladimir and Krefting, Dagmar and Kukla, Tamas and Terstyanszky, Gabor Z. and Caan, Matthan and Olabarriaga, Silvia D.},
Booktitle = {{Proceedings of the 6th Workshop on Workflows in Support of Large-scale Science}},
Doi = {10.1145/2110497.2110508},
Pages = {87--96},
Publisher = {ACM},
Series = {WORKS '11},
Title = {Exploring Workflow Interoperability Tools for Neuroimaging Data Analysis},
Year = {2011},}
  • D. Krefting, T. Glatard, V. Korkhov, J. Montagnat, and S. D. Olabarriaga, “Enabling grid interoperability at workflow level.,” in Proceedings of the Grid WorkflowWorkshop 2011 (GWW 2011), 2011.
    [Bibtex] 
    @inproceedings{Krefting,
Author = {Krefting, D. and Glatard, T. and Korkhov, V. and Montagnat, J. and Olabarriaga, S. D.},
Booktitle = {{Proceedings of the Grid WorkflowWorkshop 2011 (GWW 2011)}},
Month = {March},
Title = {Enabling Grid Interoperability at Workflow Level.},
Year = {2011}}
  • [DOI] Y. Mohammed, S. Shahand, V. Korkhov, A. C. M. Luyf, B. D. C. van Schaik, M. W. A. Caan, A. H. C. van Kampen, M. Palmblad, and S. D. Olabarriaga, “Data decomposition in biomedical e-science applications,” in e-Science Workshops (eScienceW), 2011 IEEE Seventh International Conference on, 2011, pp. 158-165.
    [Bibtex] 
    @inproceedings{mohammed:2011ab,
Author = {Mohammed, Y. and Shahand, S. and Korkhov, V. and Luyf, A.C.M. and van Schaik, B.D.C. and Caan, M.W.A. and van Kampen, A.H.C. and Palmblad, M. and Olabarriaga, S.D.},
Booktitle = {{e-Science Workshops (eScienceW), 2011 IEEE Seventh International Conference on}},
Doi = {10.1109/eScienceW.2011.7},
Month = {dec.},
Pages = {158 -165},
Title = {Data Decomposition in Biomedical e-Science Applications},
Year = {2011},}
  • S. Shahand, M. Santcroos, Y. Mohammed, V. Korkhov, A. Luyf, A. van Kampen, and S. Olabarriaga, “Front-ends to Biomedical Data Analysis on Grids,” in Proceedings of HealthGrid 2011, Bristol, UK, 2011.
    [Bibtex] 
    @inproceedings{shahand:2011aa,
Address = {Bristol, UK},
Author = {Shahand, S. and Santcroos, M. and Mohammed, Y. and Korkhov, V. and Luyf, A. and van Kampen, A. and Olabarriaga, S.},
Booktitle = {{Proceedings of HealthGrid 2011}},
Title = {{Front-ends to Biomedical Data Analysis on Grids}},
Year = {2011}}

2010

  • [DOI] M. W. A. Caan, F. M. Vos, A. H. C. van Kampen, S. D. Olabarriaga, and L. J. van Vliet, “Gridifying a diffusion tensor imaging analysis pipeline,” in Proceedings of the 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing, Washington, DC, USA, 2010, p. 733–738.
    [Bibtex] 
    @inproceedings{Caan:2010:GDT:1844765.1845109,
Acmid = {1845109},
Address = {Washington, DC, USA},
Author = {Caan, Matthan W. A. and Vos, Frans M. and van Kampen, Antoine H. C. and Olabarriaga, Silvia D. and van Vliet, Lucas J.},
Booktitle = {{Proceedings of the 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing}},
Doi = {10.1109/CCGRID.2010.99},
Isbn = {978-0-7695-4039-9},
Numpages = {6},
Pages = {733--738},
Publisher = {IEEE Computer Society},
Series = {CCGRID '10},
Title = {Gridifying a Diffusion Tensor Imaging Analysis Pipeline},
Url = {http://dx.doi.org/10.1109/CCGRID.2010.99},
Year = {2010},
Bdsk-Url-1 = {http://dx.doi.org/10.1109/CCGRID.2010.99}}
  • [DOI] M. Caan, H. Khedoe, D. Poot, A. den Dekker, S. Olabarriaga, K. Grimbergen, L. van Vliet, and F. Vos, “Estimation of diffusion properties in crossing fiber bundles,” IEEE Transactions on Medical Imaging, vol. 29, iss. 8, pp. 1504-15, 2010.
    [Bibtex] 
    @article{Caan,
Author = {Caan, MW and Khedoe, HG and Poot, DH and den Dekker, AJ and Olabarriaga, SD and Grimbergen, KA and van Vliet, LJ and Vos, FM},
Doi = {10.1109/TMI.2010.2049577},
Journal = {{IEEE Transactions on Medical Imaging}},
Number = {8},
Pages = {1504-15},
Title = {Estimation of diffusion properties in crossing fiber bundles},
Volume = {29},
Year = {2010},}
  • [DOI] T. Glatard, R. S. Soleman, D. J. Veltman, A. J. Nederveen, and S. D. Olabarriaga, “Large-scale functional MRI study on a production grid,” Future Generation Computer Systems, vol. 26, iss. 4, pp. 685-692, 2010.
    [Bibtex] 
    @article{Glatard2010685,
Author = {T. Glatard and R.S. Soleman and D.J. Veltman and A.J. Nederveen and S.D. Olabarriaga},
Doi = {http://dx.doi.org/10.1016/j.future.2009.07.014},
Journal = {{Future Generation Computer Systems}},
Number = {4},
Pages = {685 - 692},
Title = {Large-scale functional {MRI} study on a production grid},
Volume = {26},
Year = {2010},}
  • [DOI] F. Gwadry-Sridhar, S. D. Olabarriaga, A. van Kampen, M. Bauer, and T. Solomonides, “Hitting the ground running: Healthgrid deployment and adoption,” in Proceedings of HealthGrid 2010, 2010, pp. 40-51.
    [Bibtex] 
    @inproceedings{Gwadry-Sridhar,
Author = {Gwadry-Sridhar, F. and Olabarriaga, S.D. and van Kampen, A. and Bauer, M. and Solomonides, T.},
Booktitle = {{Proceedings of HealthGrid 2010}},
Doi = {http://www.ncbi.nlm.nih.gov/pubmed/20543425},
Pages = {40-51},
Publisher = {IOS Press},
Series = {{Studies in Health Technology and Informatics}},
Title = {{Hitting the ground running: Healthgrid deployment and adoption}},
Year = {2010},}
  • [DOI] A. Luyf, B. van Schaik, M. de Vries, F. Baas, A. van Kampen, and S. Olabarriaga, “Initial steps towards a production platform for DNA sequence analysis on the grid,” BMC Bioinformatics, vol. 11, iss. 1, p. 598, 2010.
    [Bibtex] 
    @article{21156038,
Author = {Luyf, Angela and van Schaik, Barbera and de Vries, Michel and Baas, Frank and van Kampen, Antoine and Olabarriaga, Silvia},
Doi = {10.1186/1471-2105-11-598},
Journal = {{BMC Bioinformatics}},
Number = {1},
Pages = {598},
Title = {Initial steps towards a production platform for {DNA} sequence analysis on the grid},
Volume = {11},
Year = {2010},}
  • [DOI] S. D. Olabarriaga and J. Montagnat, “Special Section: Medical Imaging on Grids,” Future Generation Computer Systems, vol. 26, iss. 4, p. 678–680, 2010.
    [Bibtex] 
    @article{Olabarriaga:2010:SSM:1715948.1716284,
Author = {Olabarriaga, S. D. and Montagnat, Johan},
Doi = {10.1016/j.future.2009.08.015},
Journal = {{Future Generation Computer Systems}},
Month = apr,
Number = {4},
Pages = {678--680},
Title = {{Special Section: Medical Imaging on Grids}},
Volume = {26},
Year = {2010},}
  • [DOI] S. D. Olabarriaga, T. Glatard, and P. T. de Boer, “A virtual laboratory for medical image analysis,” IEEE Trans. Info. Tech. Biomed., vol. 14, iss. 4, p. 979–985, 2010.
    [Bibtex] 
    @article{Olabarriaga:2010:VLM:1856563.1856574,
Author = {Olabarriaga, S. D. and Glatard, Tristan and de Boer, Piter T.},
Doi = {10.1109/TITB.2010.2046742},
Journal = {{IEEE Trans. Info. Tech. Biomed.}},
Month = jul,
Number = {4},
Pages = {979--985},
Title = {A Virtual Laboratory for Medical Image Analysis},
Volume = {14},
Year = {2010},}

2009

  • S. Olabarriaga, T. Glatard, A. Hoheisel, A. J. Nederveen, and D. Krefting, “Crossing healthgrid borders: early results in medical imaging,” Studies in health technology and informatics, vol. 147, p. 62–-71, 2009.
    [Bibtex] 
    @article{PMID:19593045,
Author = {Olabarriaga, S{\'\i}lvia and Glatard, Tristan and Hoheisel, Andreas and Nederveen, Aart J and Krefting, Dagmar},
Issn = {0926-9630},
Journal = {Studies in health technology and informatics},
Pages = {62---71},
Title = {Crossing Healthgrid borders: early results in medical imaging},
Url = {http://europepmc.org/abstract/MED/19593045},
Volume = {147},
Year = {2009},}
  • [DOI] J. D. Sluimer, W. M. van der Flier, G. B. Karas, R. van Schijndel, J. Barnes, R. G. Boyes, K. S. Cover, S. D. Olabarriaga, N. C. Fox, P. Scheltens, H. Vrenken, and F. Barkhof, “Accelerating regional atrophy rates in the progression from normal aging to Alzheimer’s disease,” European Radiology, vol. 19, iss. 12, p. 2826, 2009.
    [Bibtex] 
    @article{Sluimer2009,
Author = {Sluimer, Jasper D. and van der Flier, Wiesje M. and Karas, Giorgos B. and van Schijndel, Ronald and Barnes, Josephine and Boyes, Richard G. and Cover, Keith S. and Olabarriaga, S{\'\i}lvia D. and Fox, Nick C. and Scheltens, Philip and Vrenken, Hugo and Barkhof, Frederik},
Doi = {10.1007/s00330-009-1512-5},
Issn = {1432-1084},
Journal = {{European Radiology}},
Month = {Jul},
Number = {12},
Pages = {2826},
Title = {{Accelerating regional atrophy rates in the progression from normal aging to Alzheimer's disease}},
Url = {https://doi.org/10.1007/s00330-009-1512-5},
Volume = {19},
Year = {2009},}

2008

  • [DOI] S. Caton, M. Caan, S. Olabarriaga, O. Rana, and B. Batchelor, “Using dynamic condor-based services for classifying schizophrenia in diffusion tensor images,” in 2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID), 2008, pp. 234-241.
    [Bibtex] 
    @inproceedings{4534224,
Author = {S. Caton and M. Caan and S. Olabarriaga and O. Rana and B. Batchelor},
Booktitle = {{2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID)}},
Doi = {10.1109/CCGRID.2008.12},
Month = {May},
Pages = {234-241},
Title = {Using Dynamic Condor-Based Services for Classifying Schizophrenia in Diffusion Tensor Images},
Year = {2008},}
  • [DOI] W. M. van der Flier, J. Sluimer, G. B. Karas, R. van Schijndel, J. Barnes, R. Boyes, K. Cover, S. Olabarriaga, N. C. Fox, P. Scheltens, H. Vrenken, and F. Barkhof, “P1-302: Accelerating regional atrophy rates in the progression from normal aging to Alzheimer’s disease,” Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association, vol. 4, iss. 4, p. T308, 2008.
    [Bibtex] 
    @article{Sluimer,
Annote = {doi: 10.1016/j.jalz.2008.05.893},
Author = {van der Flier, Wiesje M. and Sluimer, Jasper and Karas, Giorgos B. and van Schijndel, Ronald and Barnes, Josephine and Boyes, Richard and Cover, Keith and Olabarriaga, Silvia and Fox, Nick C. and Scheltens, Philip and Vrenken, Hugo and Barkhof, Frederik},
Doi = {10.1016/j.jalz.2008.05.893},
Isbn = {1552-5260},
Journal = {{Alzheimer's \& Dementia: The Journal of the Alzheimer's Association}},
M3 = {doi: 10.1016/j.jalz.2008.05.893},
Number = {4},
Pages = {T308},
Publisher = {Elsevier},
Title = {{P1-302: Accelerating regional atrophy rates in the progression from normal aging to Alzheimer's disease}},
Ty = {JOUR},
Url = {http://dx.doi.org/10.1016/j.jalz.2008.05.893},
Volume = {4},
Year = {2008},}
  • [DOI] T. Glatard and S. D. Olabarriaga, “User friendly management of workflow results: from provenance information to grid logical file names,” in 2008 IEEE Fourth International Conference on eScience, 2008, pp. 103-110.
    [Bibtex] 
    @inproceedings{4736746,
Author = {T. Glatard and S. D. Olabarriaga},
Booktitle = {{2008 IEEE Fourth International Conference on eScience}},
Doi = {10.1109/eScience.2008.31},
Month = {Dec},
Pages = {103-110},
Title = {User Friendly Management of Workflow Results: From Provenance Information to Grid Logical File Names},
Year = {2008},
Bdsk-Url-1 = {http://dx.doi.org/10.1109/eScience.2008.31}}
  • T. Glatard, K. Boulebiar, and S. D. Olabarriaga, “Workflow integration in VL-e medical,” in 21st International Symposium on Computer-Based Medical Systems (CBMS), 2008, p. 144–146.
    [Bibtex] 
    @inproceedings{glatard:2008jo,
Author = {Glatard, Tristan and Boulebiar, Kamel and Olabarriaga, Silvia D},
Booktitle = {{21st International Symposium on Computer-Based Medical Systems (CBMS)}},
Pages = {144--146},
Publisher = {IEEE},
Title = {{Workflow integration in VL-e medical}},
Year = {2008}}
  • [DOI] G. J. ‘. v. Noordende, S. D. Olabarriaga, M. R. Koot, and C. T. A. M. d. Laat, “A Trusted Data Storage Infrastructure for Grid-Based Medical Applications,” in 2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID), 2008, pp. 627-632.
    [Bibtex] 
    @inproceedings{4534274,
Author = {G. J. v. '. Noordende and S. D. Olabarriaga and M. R. Koot and C. T. A. M. d. Laat},
Booktitle = {{2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID)}},
Doi = {10.1109/CCGRID.2008.84},
Month = {May},
Pages = {627-632},
Title = {{A Trusted Data Storage Infrastructure for Grid-Based Medical Applications}},
Year = {2008},}
  • S. Olabarriaga, T. Glatard, K. Boulebiar, and P. de Boer, “From “low hanging” to “user ready”: initial steps into a healthgrid,” Stud Health Technol Inform, vol. 138, pp. 70-79, 2008.
    [Bibtex] 
    @article{ola2008,
Author = {Olabarriaga, SD and Glatard, T and Boulebiar, K and de Boer, PT},
Journal = {{Stud Health Technol Inform}},
Pages = {70-79},
Title = {From "low hanging" to "user ready": initial steps into a HealthGrid},
Volume = {138},
Year = {2008}}
  • R. S. Soleman, T. Glatard, D. J. Veltman, A. J. Nederveen, and S. D. Olabarriaga, “Large scale fMRI parameter study on a production grid,” in Proceedings of the MICCAI-Grid Workshop, 2008.
    [Bibtex] 
    @inproceedings{Soleman:2008aa,
Author = {Remi S. Soleman and Tristan Glatard and Dick J. Veltman and Aart J. Nederveen and S D. Olabarriaga},
Booktitle = {{Proceedings of the MICCAI-Grid Workshop}},
Title = {{Large scale fMRI parameter study on a production grid}},
url = {http://www.i3s.unice.fr/~johan/MICCAI-Grid08/pdf/solemanMICCAIG.pdf},
Year = {2008}}
  • [DOI] M. M. L. de Win, G. Jager, J. Booij, L. Reneman, T. Schilt, C. Lavini, S. D. Olabarriaga, N. F. Ramsey, G. J. den Heeten, and W. van den Brink, “Neurotoxic effects of ecstasy on the thalamus,” The British Journal of Psychiatry, vol. 193, iss. 4, p. 289, 2008.
    [Bibtex] 
    @article{Win:2008aa,
Author = {de Win, Maartje M. L. and Jager, Gerry and Booij, Jan and Reneman, Liesbeth and Schilt, Thelma and Lavini, Cristina and Olabarriaga, S{\'\i}lvia D. and Ramsey, Nick F. and Heeten, Gerard J. den and van den Brink, Wim},
Journal = {{The British Journal of Psychiatry}},
Lp = {296},
doi = {10.1192/bjp.bp.106.035089},
Month = {10},
Number = {4},
Pages = {289},
Title = {Neurotoxic effects of ecstasy on the thalamus},
Ty = {JOUR},
Url = {http://bjp.rcpsych.org/content/193/4/289.abstract},
Volume = {193},
Year = {2008},}

2006

  • S. D. Olabarriaga, P. T. De Boer, K. Maheshwari, A. Belloum, J. G. Snel, A. J. Nederveen, and M. Bouwhuis, “Virtual Lab for fMRI: Bridging the Usability Gap,” in 2nd IEEE International Conference on e-Science and Grid Computing, 2006, p. 53.
    [Bibtex] 
    @inproceedings{olabarriaga:2006et,
Author = {Olabarriaga, S.D. and De Boer, P.T. and Maheshwari, Ketan and Belloum, A and Snel, J.G. and Nederveen, A.J. and Bouwhuis, M.},
Booktitle = {{2nd IEEE International Conference on e-Science and Grid Computing}},
Month = dec,
Pages = {53},
Title = {{Virtual Lab for fMRI: Bridging the Usability Gap}},
Year = {2006}}